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BioLinkBERT-base

BioLinkBERT-base model pretrained on PubMed abstracts along with citation link information. It is introduced in the paper LinkBERT: Pretraining Language Models with Document Links (ACL 2022). The code and data are available in this repository. This model achieves state-of-the-art performance on several biomedical NLP benchmarks such as BLURB and MedQA-USMLE. LinkBERT is a transformer encoder (BERT-like) model pretrained on a large corpus of documents. It is an improvement of BERT that newly captures **document links** such as hyperlinks and citation links to include knowledge that spans across multiple documents. Specifically, it was pretrained by feeding linked documents into the same language model context, besides a single document.

BioLinkBERT-base model pretrained on PubMed abstracts along with citation link information. It is introduced in the paper LinkBERT: Pretraining Language Models with Document Links (ACL 2022). The code and data are available in this repository. This model achieves state-of-the-art performance on several biomedical NLP benchmarks such as BLURB and MedQA-USMLE. LinkBERT is a transformer encoder (BERT-like) model pretrained on a large corpus of documents. It is an improvement of BERT that newly captures **document links** such as hyperlinks and citation links to include knowledge that spans across multiple documents. Specifically, it was pretrained by feeding linked documents into the same language model context, besides a single document.

Sources

huggingface.co ↗